Old topic, but I just found
a full list of the 100 games online, so I can answer that wondering about FF game placement on it. There were only two in the list. Final Fantasy VII was #21 and Final Fantasy III (the SNES one) was #9. You can read the whole list here:
EGM did the Top 100 list again in issue #150. Both Phantasy Stars dropped considerably: Phantasy Star I is 96, Phantasy Star II is 71. Phantasy Star Online Ver. 2 comes in at 45. There are 5 Final Fantasys scattered through the list this time. I found
this list online, too. It's more difficult to read, because the guy is striking them out, but it's serviceable.